Reut Shalgi

Current position: Assistant Professor
Dept. of Biochemistry
Rapapport Institute of Medical Research
Faculty of Medicine
Technion
Haifa
ISRAEL

Former Positions


2009 – 2014 Post-Doctoral fellow, Labs of Prof. Chris Burge, Department of Biology, Massachusetts Institute of Technology,
and Prof. Susan Lindquist, the Whitehead Institute.

Education


2005 – 2009 Ph.D. in Life Sciences, Weizmann Institute of Science, Israel.
Advisors: Prof. Moshe Oren and Prof. Yitzhak Pilpel.
Thesis: Coupling transcriptional and post-transcriptional miRNA regulation in the control of cell proliferation.
2002 – 2005 M.Sc. in Bioinformatics, Weizmann Institute of Science, Israel.
Advisors: Prof. Yitzhak Pilpel and Prof. Ron Shamir.
Thesis: Discovery of functional sequence motifs and their combinations through gene annotations.
1999 – 2002 B.Sc. in Computer Science (Cum Laude) and Life Sciences (Cum Laude), Tel Aviv University, Israel (double major).

Awards and fellowships


October 2011 The Machiah Foundation Post-Doctoral Fellowship.
July         2010 National Postdoctoral Award for Advancing Women in Science (Israeli national award).
January  2010 EMBO Long term Post-Doctoral Fellowship.
June        2007 EMBO Short term Fellowship, given for a collaborative visit to Prof. Stephen Cohen’s lab, EMBL Heidelberg.
2007 Prof. Lee Segal Award for Mathematical applications to Biological systems.
2006 – 2008 Horowitz Foundation for Complexity Sciences, PhD Fellowship.
2005 Center for Systems Biology Award, Weizmann Institute of Science.
2002 B.Sc. cum laude.
2002 Dean’s excellence list, Faculty of Exact Sciences.
2000 Dean’s excellence list, Faculty of Life Sciences.

Travel awards


October 2008 The 14th International p53 Workshop Shanghai, China.
August 2008 International Conference of Systems Biology – ICSB2008, Gothenburg, Sweden.

Invited talks


  • “Widespread regulation of translation by elongation pausing in heat shock”. ASBMB Annual meeting, Experimental Biology 2013, Boston, MA. April 2013.
  • “Widespread regulation of translation elongation pausing in the mammalian stress response”. Special seminar, Department of Chemical and Systems Biology, Stanford University, School of Medicine. March 2013.
  • “Widespread regulation of translation elongation pausing in heat shock is mediated by chaperones”. Epigenomics seminar, Broad Institute. Oct 2012.
  • “Widespread regulation of translation elongation pausing in heat shock is mediated by chaperones”. CSHL Molecular Chaperones and stress responses meeting, Cold Spring Harbor Labs, NY. May 2012.
  • “Widespread regulation of translation elongation pausing in heat shock”. New England RNA Data club. March 2012.
  • “Lost in translation: Novel mode of translational control in heat shock – elongation pausing”. Systems Biology department seminar, Harvard. October 2011.
  • “Shared transcription programs for miRNAs and their targets in mammalians”. OncomiRs EC grant meeting, Barcelona, Spain. November 2008.
  • “Shared transcription programs for miRNAs and their targets is a common feature in the mammalian regulatory network”. International Conference of Systems Biology – ICSB2008, Gothenburg, Sweden. August 2008.
  • “Global and local architecture of the mammalian microRNA-transcription factor regulatory network”. Guest Lecture, Felsenstein Medical Research Center (FMRC) Sackler Faculty of Medicine, Tel Aviv University Rabin Medical Center. March 2008.
  • “Global and local architecture of the mammalian microRNA-transcription factor regulatory network”. Guest Lecture, Computational Genomic Seminar, Tel Aviv University. October 2007.
  • “Regulation of transcript stability and post-transcriptional processes – from yeast to human”. Regulatory Sequence Motif Discovery workshop, EMBRACE. Sweden, November 2006.

Teaching experience


2008 Introduction to Matlab & Data Analysis, Weizmann Institute of Science, Teaching assistant.
2003 – 2007 Perl Programming Course for Bioinformatics and Internet, Weizmann Institute of Science, Teaching assistant.
2004 – 2006 Object-Oriented and Database Programming for Bioinformatics and Internet, Weizmann Institute of Science, Teaching assistant.
2004 Evolutionary Genomics, Weizmann Institute of Science, Teaching assistant.

Professional activities


Journal reviewing: RNA, Nucleic Acids Research, PLoS Computational Biology, Medical Oncology, BMC Bioinformatics.